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#94: Problems reading mol2 files
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(Anonymous)
issuedata
Classification:
Bug
Topic:
Backend
Importance:
Medium
Assigned to:
Created by: annedehof
Created at: 2008-05-30
progress
Deadline:
2008-06-13 01:40 PM
Hours estimated:
0
Hours needed:
0
Percent done:
0
contact
Name:
anna dehof
E-Mail:
anne@bioinf.uni-sb.de
Description:
reading mol2 files containing @<TRIPOS>SET UNK_ATOMS STATIC ATOMS AMSOM **** Atom types guessed for these atoms 148 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 0 0 3 4 5 6 7 8 9 10 11 12 13 14 15 \ 26 27 28 29 30 31 32 33 34 35 36 0 0 0 0 0 0 0 \ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \ 0 0 0 fails and one gets reading MOL2 file... MOL2File::read: section ignored in line 0: DICT --------------------------------------------------- FATAL: uncaught exception! --------------------------------------------------- last entry in the exception handler: exception of type InvalidFormat occured in line 425 of string.C error message: problem converting 'STATIC' to a number. ---------------------------------------------------
Transcript
#1:
2008-05-30 01:46 PM (annedehof)
topic: "" ->
"Backend"
title: "" ->
"Problems reading mol2 files"
description: "" ->
"reading mol2 files containing
@<TRIPOS>SET
UNK_ATOMS STATIC ATOMS AMSOM **** Atom types guessed for these atoms
148 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0 0 0 3 4 5 6 7 8 9 10 11 12 13 14 15 \
26 27 28 29 30 31 32 33 34 35 36 0 0 0 0 0 0 0 \
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 \
0 0 0
fails and one gets
reading MOL2 file...
MOL2File::read: section ignored in line 0: DICT
---------------------------------------------------
FATAL: uncaught exception!
---------------------------------------------------
last entry in the exception handler:
exception of type InvalidFormat occured in line 425 of string.C
error message: problem converting 'STATIC' to a number.
---------------------------------------------------
"
PloneCollectorNG (C) 2003-2004 by ZOPYX - Software Development and Consulting Andreas Jung
