BALL Bug Tracker
(Report your BALL bugs here!)
Browse issues
(Anonymous)
104.
calculateSESGrid - permanent OutOfGrid-Exception
Status: Pending •
Topic: Others •
Importance:
Medium
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
In BALL-1.2 The function
TRegularData3D<char>* calculateSESGrid (const Vector3& lower, const Vector3& upper, float spacing, const System& system, float probe_radius) in source/SOLVATION/molecularSurfaceGrid.C
calls ...
Submitted by Hermann on 2008-09-29 •
Last modified: 2008-09-29
(52.9
days ago)
103.
problems in the installation of ball and ballview
Status: Accepted •
Topic: UI •
Importance:
Medium
•
Assigned: anhi •
# Followups: 5 •
Uploads: 0 •
Refs: 0
I've been trying for the last days to install BALL and BALLview either on my lab PC
(Dell, Intel Core duo, OpenSuse 10.3) and on my laptop (AMD Turion 64, Ubuntu 8.04), and
in both cases I had the same problems: after ...
Submitted by serexia on 2008-09-03 •
Last modified: 2008-09-03
(78.9
days ago)
102.
SegFault while switching representations on and off
Status: Pending •
Topic: UI •
Importance:
Critical
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
Load the PDBs 1ADB twice in BALLView (or 2 big other molecules) an switch the visibility mode of both
on and off. Then you will get a segmentation fault in
in function BALL::VIEW::GLvertexVector3_
Submitted by till on 2008-09-02 •
Last modified: 2008-09-02
(80.0
days ago)
101.
Distance labels Update
Status: Pending •
Topic: UI •
Importance:
Medium
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
Distance labels are not updated when "Edit mode: quickly optimize the higligthed Structure" is called. I assume, that they are never updated :-)
Submitted by annedehof on 2008-08-29 •
Last modified: 2008-08-29
(84.0
days ago)
100.
Test suite failing
Status: Pending •
Topic: Others •
Importance:
Medium
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
The following subtests failed:
- RMSDMinimizer_test
Submitted by thomasp on 2008-08-27 •
Last modified: 2008-08-27
(85.8
days ago)
99.
Problems with initialising the BALL random number generators
Status: Pending •
Topic: Backend •
Importance:
High
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
When initialising the BALL RNG with larger numbers (such as time(NULL)) these get silently set to default values, as the generating algorithm otherwise could not handle the input. Temporary workaround: Replace the ...
Submitted by dstoeckel on 2008-08-25 •
Last modified: 2008-08-25
(87.9
days ago)
98.
dihedral angle for proline
Status: Pending •
Topic: Backend •
Importance:
High
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
in BALL-1.2/source/STRUCTURE/peptideBuilder.C
217 String type = (i-1)->getType();
218 type.toUpper();
219
220 // first special case: last residue was proline
221 if (type == "PRO")
222 {
223 // ...
Submitted by lyu on 2008-08-20 •
Last modified: 2008-08-20
(92.7
days ago)
97.
Error reading DNA or RNA
Status: Pending •
Topic: UI •
Importance:
High
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
When Ball read DNA or RNA structure like pdb ID: 1RTD, 1LAE, 1ECU, 1JZC, 1F6X Ball can not built and recognized the sugar, phosphate structure (backbone)in DNA or RNA.
Submitted by Courcambeck on 2008-08-13 •
Last modified: 2008-08-13
(100.1
days ago)
96.
surfaceProcessor
Status: Pending •
Topic: UI •
Importance:
Medium
•
Assigned: •
# Followups: 1 •
Uploads: 0 •
Refs: 0
SurfaceProcessor surface_processor;
When setting the probes sphere radius to 0 by surface_processor.setProbeRadius(0.0) and then applying it to a system we get an uncaught exception.
---------------------------------------------------
FATAL: ...
Submitted by thomasp on 2008-08-06 •
Last modified: 2008-08-06
(106.9
days ago)
95.
Libraries have unneccessary Qt dependencies
Status: Pending •
Topic: Backend •
Importance:
Medium
•
Assigned: •
# Followups: 2 •
Uploads: 1 •
Refs: 0
Both libBALL as well as libVIEW link against parts of Qt which are not needed, creating uneccessary runtime dependencies. While making application startup a little slower, the real problem of this lies within the creation ...
Submitted by dstoeckel on 2008-07-31 •
Last modified: 2008-07-31
(113.0
days ago)
PloneCollectorNG (C) 2003-2004 by ZOPYX - Software Development and Consulting Andreas Jung
